Basic Information
VIS ID
TVIS44013847
Fusion event
HTLV-1-LINC00638 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
105289838/104823501 (Hg38)
End
105289838/104823501 (Hg38)
Orient
-
Location type
ncRNA_exonic
Target gene
LINC00638
Nearest miRNA
hsa-mir-1185-1/Upstream/145752; hsa-mir-12121/Downstream/41813;
Nearest TSS
ENST00000550708/Upstream/2300; ENST00000556430/Downstream/19162;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/6863, chr14-CpG: 60/Downstream/2843
Upstream sequence
AACCAGTGGTGCTGCTGGACGTTTGAAAATACAAAAggccgggcgtggtggctcatgcctgtaatcccagaattttgtgaggccgaggcgggtggatccc
Downstream sequence
aaggtcaggagttcaagaccagcctggccaagatggtaaaaccctgtgtctactaaaaatacaaaaatcagccaggcgtggtgacgggcacctgtaatcc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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