Basic Information
VIS ID
TVIS44013894
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p26.1
Reference genome
GRCh37/hg19
Start
6427988/6386301 (Hg38)
End
6427988/6386301 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-4790/Upstream/1136046; hsa-let-7g/Downstream/3894050;
Nearest TSS
ENST00000440867/Upstream/237817; ENST00000414603/Downstream/104178;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1197796, chr3-CpG: 71/Downstream/474835
Nearby gene
GRM7-AS3(No orient, 246057)
Upstream sequence
CCTCAGACGCCATTGCAAAATTGTTCTTTTTTGTTGTTCTGCAGATGTCACCAGTTTGGCAATATGAATATGTTTAGGATCATCTCTTCATGTCAATACT
Downstream sequence
CTGAAAACTAAATTACCATTTCTTATTTTTGTCTTTCACCCTTTTTCCCAGTAATAAGATACGTAAGTTCTGAATAttttcttttttttttttttttttt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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