Basic Information
VIS ID
TVIS44013905
Fusion event
HTLV-1-ZAP70 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
98353527/97737064 (Hg38)
End
98353527/97737064 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2A
Target gene
ZAP70
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-34b-3p ; hsa-mir-34c-5p ; hsa-mir-631
Nearest miRNA
hsa-mir-1285-2/Upstream/938711; hsa-mir-10b/Downstream/3572386;
Nearest TSS
ENST00000437798/Upstream/1834; ENST00000489250/Downstream/758;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1510, chr2-CpG: 18/Downstream/4266
Upstream sequence
ctgcctgggggtccaggtgagtgatgctgcggctgcttcccggtggcagaggcagagatgaggagtgcggtggattctggagagattctgacaccagaac
Downstream sequence
tgccagggtttgctgatggattgggtgtgagagaaagaggagCTGCTGGAGAGGACAGTGGAGGAGCCATATGTGTGTGCACATGGGGATGGGGACAATC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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