Basic Information
VIS ID
TVIS44013922
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
12606739/12606507 (Hg38)
End
12606739/12606507 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3691/Upstream/2166713; hsa-mir-10398/Downstream/3535049;
Nearest TSS
ENST00000381078/Upstream/21103; ENST00000379348/Downstream/110298;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/593673, chr6-CpG: 44/Downstream/143138
Nearby gene
PHACTR1(+110298) ;
Upstream sequence
GGCTACTTGGTCTTAGCATAAGGGAAATTTCTCTTTATTTTGCCAACAAAATTATAGACCTCTTTCACTTAAATCTTCCATTTATATCAAGCTACACTGG
Downstream sequence
GATCATGTGTTACATATGAAAGTCTACTTCTTACTAGGATATGACAAACAGTATTTGACATCCACTCTTCTTTCTGAGCCTGTTCCACTTATAGCTGTTC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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