Basic Information
VIS ID
TVIS44013940
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
49418223/51340862 (Hg38)
End
49418223/51340862 (Hg38)
Orient
+
Location type
ncRNA_intronic
Nearest miRNA
hsa-mir-10226/Upstream/572132; hsa-mir-1250/Downstream/5550408;
Nearest TSS
ENST00000595228/Upstream/4147; ENST00000592081/Downstream/94565;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/79640, chr17-CpG: 89/Downstream/816953
Nearby gene
LINC02071(-5700) ;
Upstream sequence
gtagtaactgggcttttacagaaaaagctcactaaccccATTCAAACTGATTCCCAGTCATCCTAAATGACAGGAAAAGATGGATTGAGTTCAGACATGG
Downstream sequence
ATGCACACTTTATTGATAACCAACTTTGTTAGACATAATTAAACACTCAAAATTTCAGAAACATCAAACACTGTTCCATTACCAGCCAGGAATGGTCCCA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate