Basic Information
VIS ID
TVIS44013984
Fusion event
HTLV-1-SIGLEC5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
52130999/51627746 (Hg38)
End
52130999/51627746 (Hg38)
Orient
-
Location type
Exonic
Fragile sites / regions
FRA19A
Target gene
SIGLEC5
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10395/Upstream/420737; hsa-let-7e/Downstream/64866;
Nearest TSS
ENST00000633603/Upstream/28457; ENST00000646845/Downstream/17799;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/26001, chr19-CpG: 35/Downstream/61586
Upstream sequence
CGCCAGCACAGGGAGGGGGCCGGCCGGGCTCGAAAGGAGCATCTGCAGTGCAGACCCTCAGCCTCCCAGGAGCAGGAGGGGCCCAGCAACTGTGGGAGGG
Downstream sequence
CTGTGGGGAGGGAGGACAGAACTCAGCAGGGGGCCTCTTCCTTCTTTAATACCATGCAGTTCCTGCTCCAGCTGCCCCCACACTCACAGTAAACTGAGAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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