Basic Information
VIS ID
TVIS44013986
Fusion event
HTLV-1-LOC107986119 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
119817812/120098965 (Hg38)
End
119817812/120098965 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986119
Nearest miRNA
hsa-let-7g/Upstream/14317; hsa-mir-12124/Downstream/296703;
Nearest TSS
ENST00000440867/Upstream/3335; ENST00000461682/Downstream/145151;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/3163, chr3-CpG: 57/Downstream/186071
Nearby gene
GSK3B(-4548) ;
Upstream sequence
GAGCTGTAACAGCAATTAAGGACAGTGTGACTCTGTTCTTCTGACTTTGGGAAAACCAGTTTGGCTGGAACAAAAAGCTGATAGAGAAGACTAATGGAAG
Downstream sequence
ATAAGGTTGAAAAGGTAGGTTTGAGGGAGCTTTGTTACAGGAAAAAAAAAAAAAAAAAACTGGGCTTTGTCCTGTAGACAGTGGAGAGGTACTTTAGCAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate