Basic Information
VIS ID
TVIS44013989
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
43093266/43238123 (Hg38)
End
43093266/43238123 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/341848; hsa-mir-10400/Downstream/18476665;
Nearest TSS
ENST00000518652/Upstream/41955; ENST00000518278/Downstream/3584114;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/96675, chr8-CpG: 95/Downstream/8223
Nearby gene
HGSNAT(+35296) ;
Upstream sequence
actttgatattttatgtacagtatataaaatgtatttggtgtactttgatattttatgcacagtatataatatgtatttggtgtactttgatattatatg
Downstream sequence
tacagtatataatatatatttggtgtactttttgatattttatgtacagtatataataagtagttggtgtaatttttgataatttaagtacagtaaataa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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