VISDB Viral Integration Site DataBase

VIS ID

TVIS44014038

Fusion event

HTLV-1-ZBED3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

q13.3

Reference genome

Start

End

76374990/77079165 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-9-5p ; hsa-mir-17-5p ; hsa-mir-4789-5p ; hsa-mir-489-3p ; hsa-mir-431-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-203a-3p ; hsa-mir-5680 ; hsa-mir-4639-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-873-3p ; hsa-mir-586 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-4499 ; hsa-mir-3929 ; hsa-mir-5700 ; hsa-mir-562 ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-1277-5p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-5580-3p ; hsa-mir-3161 ; hsa-mir-127-5p ; hsa-mir-4423-3p ; hsa-mir-3689f ; hsa-mir-3689e ; hsa-mir-3689b-5p ; hsa-mir-3689a-5p ; hsa-mir-3650 ; hsa-mir-609 ; hsa-mir-4455 ; hsa-mir-6772-5p ; hsa-mir-613 ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-4731-5p ; hsa-mir-5589-5p ; hsa-mir-5589-3p ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-6776-5p ; hsa-mir-3692-5p ; hsa-mir-4717-3p ; hsa-mir-3688-3p ; hsa-mir-1295b-3p ; hsa-mir-3622a-5p ; hsa-mir-5582-5p ; hsa-mir-1264 ; hsa-mir-3184-3p ; hsa-mir-6796-3p ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485

Nearest miRNA

hsa-mir-10397/Upstream/4200502; hsa-mir-103a-1/Downstream/5760990;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/1270, chr5-CpG: 52/Downstream/7737

Upstream sequence

AAACTAATTCACTACTGCAATAACCTATTAAAGAAAAGGGAATACAGAAAAAGGTGAAGTTTATTAGTTAGGAAATAAGTTCACAAAGGACCAAATGTGT

Downstream sequence

GATTCTAGATAAATTTGCTTTGAAAGTTGAAAAACAATGAGAAGAAAACACATGACAGACTTCTTGAGCTCTTCTGAGAACTTAGGGAGAAAATCAAGGG