Basic Information
VIS ID
TVIS44014063
Fusion event
HTLV-1-chr21 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
41227604/39855677 (Hg38)
End
41227604/39855677 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/408608; hsa-mir-3197/Downstream/356675;
Nearest TSS
ENST00000624081/Upstream/64047; ENST00000328619/Downstream/11640;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/242610, chr21-CpG: 18/Downstream/288633
Nearby gene
PCP4(+11743) ;
Upstream sequence
TACCtttttttttttttgcatgcctagtaattttggatgccagatgtgaatttcatattttggggtactaaattttatcatattcccttaaagagtgttg
Downstream sequence
gattacttacttttcttgcatgcaactaagtaacctttggacaagtctgattctgctgaggtttgatctgaggctttgtcatggtgagtcaaagactacg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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