Basic Information
VIS ID
TVIS44014082
Fusion event
HTLV-1-LOC105370955 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
87677127/87133896 (Hg38)
End
87677127/87133896 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370955
Nearest miRNA
hsa-mir-10393/Upstream/1308166; hsa-mir-11181/Downstream/812310;
Nearest TSS
ENST00000557528/Upstream/91842; ENST00000560153/Downstream/443033;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/1293012, chr15-CpG: 36/Downstream/1121527
Nearby gene
AGBL1(+104844) ;
Upstream sequence
TGGCCCTTATAAAACAGAAAGTCAACCAGACTCAGGAAATGAGCCCATAGACTTACACCAGAATGATCAGCTCCTAGGAAGAAAATGGAGATGGAGGTGA
Downstream sequence
ATATTCACTCATAGAATGCTTATGAAGATGCTAATGTGGGCCAAGTCTATGAGTTACTCAGCAAGATGTTAGCCTAAGGATCAGCCTCTTATAAAAAACT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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