Basic Information
VIS ID
TVIS44014101
Fusion event
HTLV-1-LOC112268135 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
25906078/25436872 (Hg38)
End
25906078/25436872 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112268135
Nearest miRNA
hsa-mir-208a/Upstream/1293307; hsa-mir-1185-1/Downstream/1471770;
Nearest TSS
ENST00000550708/Upstream/309874; ENST00000547786/Downstream/706433;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/386466, chr14-CpG: 30/Downstream/768085
Nearby gene
STXBP6(-386575) ;
Upstream sequence
ATTTATTTTCATTGTATTCTGACAGCCTACTCATATGATTATGCATTATGATTATTCTCCTTTTTGGAGCCTTCTCACACTTTACAAAATTAATGTGGTG
Downstream sequence
TATCCTTCATCACCATTTTCTAAAAATGGAGTATTTTCAATCAATGGATCTAGCCAAACAAATAGCCTTATATTCTTTGACATTTTTTAAATCATGGCAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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