Basic Information
VIS ID
TVIS44014127
Fusion event
HTLV-1-MIR5009 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
28976530/27604211 (Hg38)
End
28976530/27604211 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
MIR5009
Nearest miRNA
hsa-let-7c/Upstream/650168; hsa-mir-3197/Downstream/2771083;
Nearest TSS
ENST00000624081/Upstream/155632; ENST00000426418/Downstream/34482;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/460224, chr21-CpG: 29/Downstream/1280892
Upstream sequence
tgtatttagggtagttagctcttcttgttgaattgatccttttaccattatgtaatacctttctttgtcttttttgatattgtttggtttaaagtctgtt
Downstream sequence
ttttcagagactaggactgaaacccctgcttttttctgctgtccatttgcttggtaaattttcttccctccctttattttgagcctatgtgtgtctttgc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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