VISDB Viral Integration Site DataBase

VIS ID

TVIS44014129

Fusion event

HTLV-1-PARVB integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr22

Cytoband

q13.31

Reference genome

Start

End

44489170/44093290 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-5698 ; hsa-mir-1178-3p ; hsa-mir-6794-3p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-3622b-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3934-3p ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-1304-3p ; hsa-mir-5693 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-4639-3p ; hsa-mir-5007-5p ; hsa-mir-3664-5p ; hsa-mir-4797-5p ; hsa-mir-2355-5p ; hsa-mir-6729-3p ; hsa-mir-1287-5p ; hsa-mir-3121-5p ; hsa-mir-501-5p ; hsa-mir-548c-3p ; hsa-mir-6739-5p ; hsa-mir-3153 ; hsa-mir-6733-5p ; hsa-mir-4668-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-3692-5p ; hsa-mir-6884-3p ; hsa-mir-1306-5p ; hsa-mir-370-3p ; hsa-mir-6893-3p ; hsa-mir-340-3p ; hsa-mir-4684-5p ; hsa-mir-6771-3p ; hsa-mir-6827-3p

Nearest miRNA

hsa-mir-1281/Upstream/2169993; hsa-let-7a-3/Downstream/1107664;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/68380, chr22-CpG: 154/Downstream/237446

Upstream sequence

ATTCCTCCCTGGTGGATGTGGCTGAAAGGCCTGCAGGGTCTCACTGGTGCAGGGAGATGAGGGGTCATTTCTGGTTCTGGGATTGTCCCTAATCACTGGG

Downstream sequence

CGTTCCAGATCCTGTAACTGTTCAGCACTCCCTTGAGACAGGAGGTCATGGTGTTTCTGACTTGGAGCCTCTGGCTCTCTTTATTAGATTCTGTTGCATG