Basic Information
VIS ID
TVIS44014159
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
52106730/51532594 (Hg38)
End
52106730/51532594 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-15a/Upstream/183955; hsa-mir-1267/Downstream/19995;
Nearest TSS
ENST00000623511/Upstream/53556; ENST00000610018/Downstream/8964;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/78784, chr13-CpG: 120/Downstream/51326
Nearby gene
MIR4703(+19995) ;
Upstream sequence
taacgtataattaaaaaaataaaTTTTAAAACAAGACATACTCCCCTGCCTCTAGAAGAAGTCAACTGTAAGAATTGTAAGGGCAAAAAGAGTAGAAAGT
Downstream sequence
CCTGCCTTCAATATCTGGTGCCTCTTGGGATGCACTGGAAAAATTCTAATTGACACTGAATAGGGAGAGAGCAGCGTCTACTCCCAAACTTGTGATGCTT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate