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VISDB
Viral Integration Site DataBase
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TVIS44014198
Basic Information
VIS ID
TVIS44014198
Fusion event
HTLV-1-MPP7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
28554376/28265447 (Hg38)
End
28554376/28265447 (Hg38)
Orient
-
Location type
Intronic
Target gene
MPP7
miRNAs that regulate target gene
hsa-mir-32-5p
Nearest miRNA
hsa-mir-1265/Upstream/3989666; hsa-mir-107/Downstream/23811;
Nearest TSS
ENST00000439456/Upstream/26710;
ENST00000634334/Downstream/14695;
Nearest CpG islands
None/Target,
chr10-CpG: 68/Upstream/266319
,
chr10-CpG: 69/Downstream/37027
Upstream sequence
caggagttcgagaccagcctggggaacttggcgaaaccccatctccacaaaaaatgcaaaacttagccaggcatggtggtacatacctgtagtcccagct
Downstream sequence
gcttgggaggctgaggtgggaggattgcttgagtccagggggtcaagaatgcagtgagccaagatcatgccactgcactccagcttgggcaacagcataa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL205
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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