Basic Information
VIS ID
TVIS44014273
Fusion event
HTLV-1-LOC105378998 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
61444229/62148402 (Hg38)
End
61444229/62148402 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5H
Target gene
LOC105378998
Nearest miRNA
hsa-mir-10397/Upstream/2444699; hsa-mir-103a-1/Downstream/10021065;
Nearest TSS
ENST00000502646/Upstream/270293; ENST00000512541/Downstream/157760;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/521757, chr5-CpG: 141/Downstream/157388
Nearby gene
KIF2A(+157760) ;
Upstream sequence
actttggaaagtcacataatgcttcaaggtatatgaaatgggagtgatgatacattccatacttaATACGTCAAGGAGGGAATGTGTATAATAGCTAAGA
Downstream sequence
ATATGTATTTTAAAGAGTATAGAGTATGCAAAGGCCCACACAGGTACTAAGCCAATTTTAAAGATTACAGAATTACAATTAGAAGGAATCTTAATATTAT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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