Basic Information
VIS ID
TVIS44014284
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.31
Reference genome
GRCh37/hg19
Start
117854250/118214196 (Hg38)
End
117854250/118214196 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/1193877; hsa-mir-10399/Downstream/8843892;
Nearest TSS
ENST00000635602/Upstream/30029; ENST00000486422/Downstream/473;
Nearest CpG islands
chr7-CpG: 43/Target, None/Upstream, None/Downstream
Nearby gene
LSM8(No orient, 10157)
Upstream sequence
GAGTGCGCCTCTCCTAGAATCCGTCCTGGGCTCAGCTCCACGGGGCCTGTCTGCGCCGTCCTGTTACCTGTCCTTTTTGACTCCTAGGTTGAGCCCATAG
Downstream sequence
ATCCTCATCAAAACACTGTGCTGCACTTTCGCCACGTTTCCCACGCGGCACCCCGGTGGATTTTCCCGAGCTCTGTCATGGGGCACGGTTCCCATCCCTC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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