Basic Information
VIS ID
TVIS44014293
Fusion event
HTLV-1-LOC101929507 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p23
Reference genome
GRCh37/hg19
Start
13847697/13847698 (Hg38)
End
13847697/13847698 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101929507
Nearest miRNA
hsa-mir-101-2/Upstream/7839794; hsa-let-7a-1/Downstream/4725608;
Nearest TSS
ENST00000422679/Upstream/401207; ENST00000381010/Downstream/80273;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/524347, chr9-CpG: 242/Downstream/465255
Nearby gene
LINC00583(No orient, 80273)
Upstream sequence
TCTAACTGATAAGATTGTAAAATACAGCCATATTGCAAAATCAAGTATTACTGAGCTAGACCCCAGGCAAATAGTTTTTCCATTTTTAGGGCAAATTATC
Downstream sequence
CTCAATATTAAATTCCTTACTGATGTTTCACCTCCTTGCTAATTTTTATTTTTCTTTATCAAGTTGTGTGGGCTTTTATATTTCTTCTTTGGCAGTTCTA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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