Basic Information
VIS ID
TVIS44014314
Fusion event
HTLV-1-APOBEC1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
7815406/7662810 (Hg38)
End
7815406/7662810 (Hg38)
Orient
+
Location type
Intronic
Target gene
APOBEC1
Nearest miRNA
hsa-mir-141/Upstream/698619; hsa-let-7i/Downstream/1576657;
Nearest TSS
ENST00000382841/Upstream/158917; ENST00000345088/Downstream/3083;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/34158, chr12-CpG: 24/Downstream/43093
Upstream sequence
aatgtaaatttagagagcaagacatgtggacgtcggggaaggggagagctttccaagcacagggaacaccaggtgcaaacgacctgaagtgtggaccttg
Downstream sequence
acttgttcaaggaagagcaagcaagtcagcttggctgggtcggagtgatcaagacctgcaatggagggagatgagcaatggagggggtaagccacagggc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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