Basic Information
VIS ID
TVIS44014410
Fusion event
HTLV-1-LOC107986133 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
129891903/130173060 (Hg38)
End
129891903/130173060 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986133
Nearest miRNA
hsa-let-7g/Upstream/900817; hsa-mir-1224/Downstream/1812795;
Nearest TSS
ENST00000440867/Upstream/60408; ENST00000512482/Downstream/172456;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/60477, chr3-CpG: 31/Downstream/90842
Nearby gene
COL6A4P2(+39760) ;
Upstream sequence
ttttgtagagacggggttttgccatgttggtcaggatggtctcgaactcctgacttcgtgatccacctgcctcggcctcccagtgttgggattacaggag
Downstream sequence
tgagccactgcgcctggcttctgtggcttttctgacatactccatgcctgactttgagaaagccctcaggtgaaagtcttggttgtatgcagtagcaagc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate