VISDB Viral Integration Site DataBase

VIS ID

TVIS44014434

Fusion event

HTLV-1-NCOR2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

124920592/124436046 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-16-5p ; hsa-mir-9-5p ; hsa-mir-2110 ; hsa-mir-130b-5p ; hsa-mir-20a-5p ; hsa-mir-125b-5p ; hsa-mir-100-5p ; hsa-mir-30c-5p ; hsa-mir-4459 ; hsa-mir-6757-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-3178 ; hsa-mir-6799-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-25-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-658 ; hsa-mir-2277-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6087 ; hsa-mir-6871-5p ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-34a-3p ; hsa-mir-1266-5p ; hsa-mir-3197 ; hsa-mir-3612 ; hsa-mir-3937 ; hsa-mir-4274 ; hsa-mir-4313 ; hsa-mir-4443 ; hsa-mir-4518 ; hsa-mir-4530 ; hsa-mir-4802-5p ; hsa-mir-510-5p ; hsa-mir-6085 ; hsa-mir-650 ; hsa-mir-6798-5p ; hsa-mir-6807-5p ; hsa-mir-6813-5p ; hsa-mir-6858-3p ; hsa-mir-7108-3p

Nearest miRNA

hsa-let-7i/Upstream/98804; hsa-mir-3612/Downstream/479501;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/9128, chr12-CpG: 28/Downstream/9280

Upstream sequence

gactaaatgccctaatgtatggagagcactcagaagagcgcctgcaacacaacaggcacCGGAAGGGCAGGGTGTGCGGGCATCCTCCTCGTCCTTACGC

Downstream sequence

ACGACCTGTCCCTGCAGCCTGCAGGTCTGAGGACAGGGCCCGTGTCACAGCAACTGCGAGCCTCACACACAGTAGGTGCTCCGTGACTACTGGCATCCAG