Basic Information
VIS ID
TVIS44014435
Fusion event
HTLV-1-LOC105370150 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
32026779/31452642 (Hg38)
End
32026779/31452642 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370150
Nearest miRNA
hsa-mir-2276/Upstream/7290138; hsa-mir-1267/Downstream/8211392;
Nearest TSS
ENST00000623511/Upstream/32653; ENST00000380314/Downstream/286900;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/251745, chr13-CpG: 70/Downstream/393851
Nearby gene
B3GLCT(No orient, 120368)
Upstream sequence
GAGAGAGTAAAGGATTTTCCCAATGAGACAAAACAGTGCAGTGAAAACTGATGttcctaattggtttttctactttgttgtgcccacctttgagtggtgc
Downstream sequence
ctttgctttaactttatttgcatactcacaaaccaatcagcacacactccccattctgagtccataaaaggccccagacctggccaccagggggatcttt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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