Basic Information
VIS ID
TVIS44014558
Fusion event
HTLV-1-chr14 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.12
Reference genome
GRCh37/hg19
Start
94183871/93717525 (Hg38)
End
94183871/93717525 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/16451235; hsa-mir-1185-1/Downstream/230701;
Nearest TSS
ENST00000550708/Upstream/28532; ENST00000554404/Downstream/70234;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/286405, chr14-CpG: 143/Downstream/70081
Nearby gene
PRIMA1(-773) ;
Upstream sequence
TGAGTTGTGGCCCCTCGCTTGTGCCCAGTGGCCGGGCCTTGAAGGCACCAGGCTGGGTTCAACCCCCAGCCCCATCCCTGTTTCCTGGTATGTGCTTGAC
Downstream sequence
CTTGGCCATTGTGCTCCATTTCTGACCTGTCTCCTCACTCCAAACAGGAGGATGAAGATGCTGCAGGTGCAACTTTTTCTCTCTTCCTACATCCCTCCTG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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