Basic Information
VIS ID
TVIS44014560
Fusion event
HTLV-1-C14orf132 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
96509332/96042995 (Hg38)
End
96509332/96042995 (Hg38)
Orient
+
Location type
Intronic
Target gene
C14orf132
Nearest miRNA
hsa-mir-1260a/Upstream/905009; hsa-mir-1185-1/Downstream/4066424;
Nearest TSS
ENST00000550708/Upstream/3611; ENST00000539359/Downstream/161684;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/2930, chr14-CpG: 101/Downstream/320134
Upstream sequence
ATTTCTCTTAGGCCAGGAGTGGCCAAGAGGACAGGGCCACCTGGATGTCCAGTGGGCTGGGGACAAGGCGAGAATCACAGTCTTTTAGGACTGAGTCCAA
Downstream sequence
AATCCCTGTTTCATTGGCAGGATCACGCATGTTCAAAGACAGCCGCCATGCATTCCCTGTCTCCCTCCTGGACATGCTTGCTGCCCACCACTtcaagagc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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