Basic Information
VIS ID
TVIS44014565
Fusion event
HTLV-1-LOC107984785 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
22451451/22163500 (Hg38)
End
22451451/22163500 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984785
Nearest miRNA
hsa-mir-3118-2/Upstream/212177; hsa-mir-10393/Downstream/61778;
Nearest TSS
ENST00000557528/Upstream/2632; ENST00000622895/Downstream/15042;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/273505, chr15-CpG: 215/Downstream/93834
Nearby gene
OR4N3P(+37056) ;
Upstream sequence
ATATGTGATCAAAACCCTGAAGTCTCCTAAGAGGTCATGTGTGTTCTGGTACTGGAAGCAGAACCCTAATCTCCCTACATAAAAGTGGCATCTGGACAGA
Downstream sequence
CACAACTGAACACGTAGGGACAAAGGGAATGGCACAGCAGGACACTTTTGAGGAAGTTTCAACAGTTTCCTTTTTATTCAGAGGAAGCTGCAGCAGGTGA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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