Basic Information
VIS ID
TVIS44014587
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
43399865/45322499 (Hg38)
End
43399865/45322499 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/208066; hsa-mir-10226/Downstream/152864;
Nearest TSS
ENST00000595228/Upstream/5459; ENST00000592389/Downstream/49558;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/4927, chr17-CpG: 33/Downstream/49189
Nearby gene
MAP3K14(-5435) ;
Upstream sequence
GCAAGAAGATGGGGAGACTGTATCAtgtcaggtaggatccagccaggaaaacaggacccattttgagggttTTTTtttttttaattttgatagaggtagg
Downstream sequence
ggtctccctgtgttgcccaggctgatcttgatctcctggcctcaaacgattctcccgccttggcctcccaaagcactgggattacaggcatgagcctcta
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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