VISDB Viral Integration Site DataBase

VIS ID

TVIS44014632

Fusion event

HTLV-1-PMEPA1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.31

Reference genome

Start

End

56246260/57671204 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-511-5p ; hsa-mir-6830-3p ; hsa-mir-654-3p ; hsa-mir-487a-3p ; hsa-mir-154-3p ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-410-3p ; hsa-mir-5692b ; hsa-mir-5692c ; hsa-mir-369-3p ; hsa-mir-7161-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-367-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-4279 ; hsa-mir-1229-3p ; hsa-mir-6749-3p ; hsa-mir-6845-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-6777-3p ; hsa-mir-4639-3p ; hsa-mir-4656 ; hsa-mir-3616-3p ; hsa-mir-7843-5p ; hsa-mir-6879-5p ; hsa-mir-6735-5p ; hsa-mir-4632-5p ; hsa-mir-4436b-3p ; hsa-mir-19a-3p ; hsa-mir-219a-1-3p ; hsa-mir-3126-5p ; hsa-mir-3155a ; hsa-mir-3155b ; hsa-mir-3909 ; hsa-mir-4438 ; hsa-mir-4712-3p ; hsa-mir-484 ; hsa-mir-571 ; hsa-mir-6755-3p ; hsa-mir-6852-3p ; hsa-mir-6873-5p ; hsa-mir-6875-5p ; hsa-mir-760

Nearest miRNA

hsa-mir-103a-2/Upstream/349613; hsa-mir-1-1/Downstream/1146411;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/6484, chr20-CpG: 30/Downstream/989

Upstream sequence

ATCCTTCTTGCTATTATCCAAATGGAAAGAACTAATGGGATTTTTGTTTCTATTGTCACTGACATCGAACACCTTTAAACATCCACTGTCAGCAAAATAT

Downstream sequence

CAGTCACCGTTTGAATTATTGGCAGAACGGAGTGAACTCACAGTGAGCGAGCAGTCAGTGGACATGTCGGAGGTGCATAACATCCGAAAGTTATTTAAAA