Basic Information
VIS ID
TVIS44014740
Fusion event
HTLV-1-LOC105376234 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
118564448/115802169 (Hg38)
End
118564448/115802169 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9E ; FRA9B
Target gene
LOC105376234
Nearest miRNA
hsa-let-7a-1/Upstream/1592640; hsa-mir-12126/Downstream/4442810;
Nearest TSS
ENST00000422679/Upstream/57839; ENST00000416507/Downstream/123038;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1190373, chr9-CpG: 77/Downstream/351914
Nearby gene
LOC101928775(No orient, 57930)
Upstream sequence
ctgctagcttttgaatgtgtttgctcttgcttttctagttcttttaattgtgatgttagggtgtcaattttggatctttcctgctttctcttgtgggcat
Downstream sequence
ttagtgctataaatttccctctacacactgctttgaatgtgtcccagagattctggtatactgtgtctttgttctcgttggtttcaaagaacatctttat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate