Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS44014749
Basic Information
VIS ID
TVIS44014749
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
78369949/79114452 (Hg38)
End
78369949/79114452 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/213203; hsa-mir-105-1/Downstream/5111300;
Nearest TSS
ENST00000429181/Upstream/169031;
ENST00000276077/Downstream/30211;
Nearest CpG islands
None/Target,
chrX-CpG: 62/Upstream/974657
,
chrX-CpG: 27/Downstream/1220769
Nearby gene
GPR174
(+56520) ;
Upstream sequence
ggtgtaagctcttggtgtatctaacattctagggtctggaggatggtagtcctcatctcacagctccactaggtagttccccagtaaggactctgtgtgg
Downstream sequence
aggctccccacattttccttccagactgccctatcagaggttctccatgaggacttcacccctaaagcagacttctgcctggacatccaggcatttccat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL182
Sample type
Nontumor
Gender
Female
CpG Island Information
×
Download
Curate