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VISDB
Viral Integration Site DataBase
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TVIS44014762
Basic Information
VIS ID
TVIS44014762
Fusion event
HTLV-1-IGH integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
107008950/106552956 (Hg38)
End
107008950/106552956 (Hg38)
Orient
-
Location type
Intronic
Target gene
IGH
Nearest miRNA
hsa-mir-1185-1/Upstream/693403; hsa-mir-5195/Downstream/297929;
Nearest TSS
ENST00000550708/Upstream/14612;
ENST00000390625/Downstream/4521;
Nearest CpG islands
None/Target,
chr14-CpG: 35/Upstream/70145
,
chr14-CpG: 17/Downstream/259902
Nearby gene
LINC00221
(+57421) ;
Upstream sequence
aaaagcttcttacaaaaatgagctataatattttattccatgtatatgaaattcaaaacaagaaaatggacctatagtgacagaaatcagaacaTTtttc
Downstream sequence
tatttacatttctctgatgattagtgatgttaaacattttaaaaatatatttgctggtcacttgtatgtattcctttgagaagtgtctgtgtcatttgcc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL238
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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