Basic Information
VIS ID
TVIS44014883
Fusion event
HTLV-1-LOC102723752 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
41874066/41873964 (Hg38)
End
41874066/41873964 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
LOC102723752
Nearest miRNA
hsa-mir-10397/Upstream/3316403; hsa-mir-103a-1/Downstream/12077540;
Nearest TSS
ENST00000502646/Upstream/3445; ENST00000505931/Downstream/30224;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/3190, chr5-CpG: 33/Downstream/29966
Nearby gene
OXCT1-AS1(No orient, 1728)
Upstream sequence
AGGGCTTAAGGCCTGGAATGAAATTGAAAATTATGATAAGATACTAAGGAAACCTAAAAGAGTAAAATgcaccagagtgatcttgtatacattcaagact
Downstream sequence
gatcactttatttctgcttaaaacctgtcattggttttccccactgcctttgagatccaaagttcatacTTAATAACATGACATAGAAGAGGATCATCTC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate