Basic Information
VIS ID
TVIS44014895
Fusion event
HTLV-1-LOC101928516 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
GRCh37/hg19
Start
74783675/74073959 (Hg38)
End
74783675/74073959 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA6D
Target gene
LOC101928516
Nearest miRNA
hsa-mir-10398/Upstream/1106206; hsa-mir-10524/Downstream/1354448;
Nearest TSS
ENST00000381078/Upstream/4508; ENST00000421318/Downstream/521254;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/377548, chr6-CpG: 28/Downstream/1011205
Upstream sequence
ctatatgaaattgttatttttgtaagtcaccaatggttggatgttggcagtttcataaggttcattctaaTAGTTCCTGGGACACAAATGACTCGAAGTA
Downstream sequence
GGTCAAGACAGGTTCAGCACTTGTACTGTGCAtgttaatctgagtcctccaagaagcagatgctaagatggaacaaaacaggcaaggattttattaggag
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate