Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene101392461005642410061192100493381005322810039728100415591008561110086356100727701007315210086471100868051004734410047493100781241007827310089487
Basic Information
VIS ID
TVIS44014973
Fusion event
HTLV-1-LOC105371984 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
10089484/10089487 (Hg38)
End
10089484/10089487 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371984
Nearest miRNA
hsa-mir-3976/Upstream/3715062; hsa-mir-1-2/Downstream/670097;
Nearest TSS
ENST00000575820/Upstream/141893; ENST00000582470/Downstream/35853;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/56577, chr18-CpG: 31/Downstream/42369
Nearby gene
VAPA(+129466) ;
Upstream sequence
CAATGACAAACCCTGGAGGGAAGAACACTGAGTGAGAAATATTTGTGGATAGGCACAGATTTGTATGCAAATCATTGAGATTATTTTTGCTAAATATATT
Downstream sequence
AGAATTTTGAGTTAAATGGCAGGAAAGAGGCCCAGTGTGGCTCATCTGTGTTAGCAGTTTGCATTGCCTTATGAGTCTCTTCatcttggcatttcagatt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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