Basic Information
VIS ID
TVIS44014993
Fusion event
HTLV-1-ZSCAN31 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
28313409/28345632 (Hg38)
End
28313409/28345632 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZSCAN31
Nearest miRNA
hsa-mir-3143/Upstream/1197944; hsa-mir-10398/Downstream/2238700;
Nearest TSS
ENST00000381078/Upstream/3881; ENST00000341464/Downstream/4282;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/63841, chr6-CpG: 25/Downstream/37713
Nearby gene
ZKSCAN3(+4282) ;
Upstream sequence
atgatacaacatcatgaggggaccaatcccatcagtggcaagtgattcattttgactagaattaacacatattctaggtgtgggtttgccttttctggtc
Downstream sequence
ataggactcagctagtactattatccaagaacatacagaatcattgatccactgacataggatctggcataactttacatgggttcaaaggaggtgtagc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate