VISDB Viral Integration Site DataBase

VIS ID

TVIS44015013

Fusion event

HTLV-1-SLCO3A1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr15

Cytoband

q26.1

Reference genome

Start

End

92619725/92076495 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-218-1-3p ; hsa-let-7e-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-3150b-3p ; hsa-mir-4689 ; hsa-mir-4784 ; hsa-mir-6838-5p ; hsa-mir-6858-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-330-3p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-374b-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-3974 ; hsa-mir-370-5p ; hsa-mir-874-5p ; hsa-mir-4635 ; hsa-mir-149-5p ; hsa-mir-4264 ; hsa-mir-1224-3p ; hsa-mir-622 ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-6765-3p ; hsa-mir-210-3p ; hsa-mir-147b ; hsa-mir-933 ; hsa-mir-3907 ; hsa-mir-1470 ; hsa-mir-6887-3p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-4433b-3p ; hsa-mir-6856-5p ; hsa-mir-6758-5p

Nearest miRNA

hsa-mir-10393/Upstream/2069654; hsa-mir-1302-10/Downstream/827904;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/160047, chr15-CpG: 170/Downstream/316952

Upstream sequence

TTCAGTACTTTCCCCGGATGCAGGACGTAGTTTTGATGTTAGGATTTCTGCTTTATCCTGGAACCCCAGCTCCCATCCCTATCTTGTGCCCTATGCATGA

Downstream sequence

TCACTGAGTCTCTACTCATTTGCTCCTGCATGGGGCCTGGGCATGAATCCACGGATAGACAGTGCCCCAGGGACCTGCCGCTAGCCCACCCACTCTGCCC