Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS44015021
Basic Information
VIS ID
TVIS44015021
Fusion event
HTLV-1-PER2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
239191288/238282647 (Hg38)
End
239191288/238282647 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2J
Target gene
PER2
miRNAs that regulate target gene
hsa-mir-24-3p
;
hsa-mir-5087
;
hsa-mir-6715a-3p
;
hsa-mir-6771-5p
;
hsa-mir-425-3p
;
hsa-mir-27b-5p
;
hsa-mir-6515-3p
;
hsa-mir-4699-3p
;
hsa-mir-590-5p
;
hsa-mir-21-5p
;
hsa-mir-5580-3p
;
hsa-mir-665
;
hsa-mir-133a-3p
;
hsa-mir-7977
;
hsa-mir-4281
;
hsa-mir-7160-5p
;
hsa-mir-6811-3p
;
hsa-mir-4722-5p
;
hsa-mir-6884-5p
;
hsa-mir-485-5p
;
hsa-mir-1827
;
hsa-mir-4649-3p
;
hsa-mir-3664-3p
;
hsa-mir-6078
;
hsa-mir-4433a-3p
;
hsa-mir-4459
;
hsa-mir-4768-3p
;
hsa-mir-5690
;
hsa-mir-4478
;
hsa-mir-4419b
;
hsa-mir-3929
;
hsa-mir-940
;
hsa-mir-6893-5p
;
hsa-mir-6808-5p
;
hsa-mir-4695-5p
;
hsa-mir-510-5p
;
hsa-mir-512-5p
;
hsa-mir-3187-3p
;
hsa-mir-4435
;
hsa-mir-588
;
hsa-mir-4701-5p
;
hsa-mir-548s
;
hsa-mir-4540
;
hsa-mir-6723-5p
;
hsa-mir-6815-3p
;
hsa-mir-4653-3p
;
hsa-mir-103a-2-5p
;
hsa-mir-8082
;
hsa-mir-4534
;
hsa-mir-571
;
hsa-mir-645
;
hsa-mir-6514-5p
;
hsa-mir-4715-5p
;
hsa-mir-557
;
hsa-mir-507
;
hsa-mir-659-3p
;
hsa-mir-29b-2-5p
;
hsa-mir-4325
;
hsa-mir-7703
;
hsa-mir-555
;
hsa-mir-8064
;
hsa-mir-6861-5p
;
hsa-mir-561-3p
;
hsa-mir-186-5p
;
hsa-mir-3133
;
hsa-mir-92a-3p
;
hsa-mir-25-3p
;
hsa-mir-32-5p
;
hsa-mir-363-3p
;
hsa-mir-92b-3p
;
hsa-mir-367-3p
;
hsa-mir-495-3p
;
hsa-mir-5688
;
hsa-mir-30e-5p
;
hsa-mir-30d-5p
;
hsa-mir-30c-5p
;
hsa-mir-30b-5p
;
hsa-mir-181d-5p
;
hsa-mir-30a-5p
;
hsa-mir-181c-5p
;
hsa-mir-181b-5p
;
hsa-mir-181a-5p
Nearest miRNA
hsa-mir-10b/Upstream/771659; hsa-mir-149/Downstream/786170;
Nearest TSS
ENST00000437798/Upstream/4711;
ENST00000637634/Downstream/5962;
Nearest CpG islands
None/Target,
chr2-CpG: 135/Upstream/41388
,
chr2-CpG: 128/Downstream/5635
Nearest cancer related gene
PER2
(TSG, No orient, 0)
Upstream sequence
GAGAGTCTCAGACATAGATGAACAAGTCCAAGAACAATAAATAACAACAACAATAAAAAGGACAGATGGCACTCAGGCAGGGCCTGCCCGGTGCCAGCAG
Downstream sequence
TTTCCCACTGACTGACTTGCCCTtattcgcttagcactgagggctggcactggggcagacaacagagcagacatctttcctgccctcagggagcttacat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL199
Sample type
Nontumor
Gender
Female
CpG Island Information
×
Download
Curate