Basic Information
VIS ID
TVIS44015075
Fusion event
HTLV-1-SPG21 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
65279933/64987595 (Hg38)
End
65279933/64987595 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA15A
Target gene
SPG21
Nearest miRNA
hsa-mir-10393/Upstream/225080; hsa-mir-11181/Downstream/731651;
Nearest TSS
ENST00000557528/Upstream/119; ENST00000334287/Downstream/1330;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/75402, chr15-CpG: 61/Downstream/1995
Upstream sequence
TATGGCAAAGGTTAACTGAGATTGTGACCAAACTGGTCAGTACTGAATAAGAAAGAATGTGGACCATGAGCTCAAAACTGATTTTATCTCTCATGATTTT
Downstream sequence
GTTCTTCACAAAAACAAAAGCACCTGTTCATGCTGGTGGGAAAAGAGCCACAATATTAGCCTTAATCTTGCCTAAGGAAAGCCCTCTTCAGGGTGTGCTG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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