Basic Information
VIS ID
TVIS44015090
Fusion event
HTLV-1-ARHGEF1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
42391203/41887132 (Hg38)
End
42391203/41887132 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ARHGEF1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-335-5p ; hsa-mir-331-3p ; hsa-mir-26a-5p
Nearest miRNA
hsa-mir-10395/Upstream/17434; hsa-let-7e/Downstream/246313;
Nearest TSS
ENST00000633603/Upstream/2684; ENST00000598812/Downstream/5502;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/2476, chr19-CpG: 23/Downstream/17031
Nearest cancer related gene
ARHGEF1(OG, No orient, 0)
Upstream sequence
aagggatggagagatgagagacagCACATGAGACTGTGACTCAGAGAGGTGTGAGGATGGTGGCTGCAGAAACCAGATGTGGGAGGACAGAGGCACAGAG
Downstream sequence
ACAGGGACAGGACAGACGGAGCTACAGAAGCAGGAAGGGGGTGTCACCGCTgagagggagagatggagggaggagaggcagggatggtggggaaaatgag
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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