Basic Information
VIS ID
TVIS44015143
Fusion event
HTLV-1-LOC102724015 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
71762731/71296014 (Hg38)
End
71762731/71296014 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102724015
Nearest miRNA
hsa-mir-208a/Upstream/3854084; hsa-mir-1185-1/Downstream/1220806;
Nearest TSS
ENST00000550708/Upstream/76914; ENST00000557469/Downstream/15345;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/387329, chr14-CpG: 116/Downstream/24124
Nearby gene
SNORD56B(+102323) ;
Upstream sequence
acactccagcctgggcaacagagtaagaccctatctcaaaaaacaaacaaacaaacaaacaaacaaacaaCCTCATAAATTCATGCTGCTCCTTCCAAGT
Downstream sequence
CACATTCAGGACTTACTTAACTTATTCCACATTATGTGTATAACTCTTTTCATACTGAGAATCCTAGCAATTAGAACATCTCATAATTGCCCATCTATTT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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