Basic Information
VIS ID
TVIS44015157
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
181558196/180637043 (Hg38)
End
181558196/180637043 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/6213179; hsa-mir-1305/Downstream/1532250;
Nearest TSS
ENST00000502981/Upstream/1171738; ENST00000512480/Downstream/121995;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/577577, chr4-CpG: 20/Downstream/1504082
Upstream sequence
GAGAAACAGCTCTAGTAGGAAGAATAAAATTCCTTTAGTGATTACAAAAGTATCCTCTAGGCTTCTAGATTAAGAAACATCAGAAAAAGAAAGACTCTAA
Downstream sequence
ACTCCTTCAGAGTACCAATTTATTATTGGATCTTAACCTCTTTATTTTATTGTTCTTGTTTTGCAAGAGAATCTTTATCTTCCTGAACTGTGTGTGATTA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate