Basic Information
VIS ID
TVIS44015169
Fusion event
HTLV-1-LOC101927151 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q11
Reference genome
GRCh37/hg19
Start
28291565/27800657 (Hg38)
End
28291565/27800657 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101927151
Nearest miRNA
hsa-mir-10395/Upstream/7401303; hsa-let-7e/Downstream/7322043;
Nearest TSS
ENST00000633603/Upstream/6608; ENST00000586671/Downstream/88565;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/6436, chr19-CpG: 19/Downstream/5278
Upstream sequence
ACTGTAGTTCTCCCCAGTACAGTTTCAGCACCAATGACCAAGTCTCATCAGAGGAGGCCACATGATGATCTAGCAGATAGACTCTTTATTCAGTATGTGA
Downstream sequence
GAGTCATTTACAGACTGGGGACATAAATTAGAAATGATGAGCTGGATGTCTTTTAGGGTGAAAAATTACTAAATTTCTAATCTATGTTACTTTTTCTATT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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