Basic Information
VIS ID
TVIS44015192
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.31
Reference genome
GRCh37/hg19
Start
91752993/89993236 (Hg38)
End
91752993/89993236 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-107/Upstream/400409; hsa-mir-1287/Downstream/6071079;
Nearest TSS
ENST00000439456/Upstream/35863; ENST00000453889/Downstream/460934;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/155201, chr10-CpG: 137/Downstream/863827
Nearby gene
LINC01375(No orient, 35863)
Upstream sequence
ATTTAGTACATGTCTCTTTGGTAAAGTTTAGTATTGAAGGTGATGTGAGGAACATAGAGTTGAAAAAGACTTTTTTGTTTTTTTACTTTAAGGAACATAC
Downstream sequence
AATCTAACAGAGAATTTACAATctagttttctaagagcttttatcaaaaataagtgttgaatatattttatctttatttatttgtttgttttttaaattt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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