Basic Information
VIS ID
TVIS44015214
Fusion event
HTLV-1-chr20 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q12
Reference genome
GRCh37/hg19
Start
37878904/39250261 (Hg38)
End
37878904/39250261 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/733629; hsa-mir-1-1/Downstream/1918762;
Nearest TSS
ENST00000382410/Upstream/25513; ENST00000444436/Downstream/535460;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/199803, chr20-CpG: 92/Downstream/1432477
Nearby gene
LINC01734(-25513) ;
Upstream sequence
taagctgatgtatgtcaagtgccgagaaccctatgtggcactgagctgagtagggatttgaataaatattaattattGCTATTACCGGCTGTTACCTCag
Downstream sequence
cactttctaagtgacaggcccagtgctaggaactgtatatgtgataccatcccatgccattcctgtgccacctgtgtgggttgttgatatggtgtcagtt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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