Basic Information
VIS ID
TVIS44015221
Fusion event
HTLV-1-LOC107986285 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
72469029/71603312 (Hg38)
End
72469029/71603312 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986285
Nearest miRNA
hsa-mir-12113/Upstream/5326384; hsa-mir-1243/Downstream/4970256;
Nearest TSS
ENST00000502981/Upstream/264259; ENST00000344413/Downstream/151166;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/415560, chr4-CpG: 30/Downstream/428535
Nearby gene
SLC4A4(+31225) ;
Upstream sequence
gttagatatgtcttctatctgctcctgagggccaacggttaaaattttagaagtcctataagctggttgttatatatagatattatttaaaatttatatt
Downstream sequence
aatttgcaattaaataaattatattaataataaaggtaataaatactcaaagcttttcacttcccaagttatgttaggattacttatgttcttgaggtta
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate