Basic Information
VIS ID
TVIS44015244
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
71727670/71333890 (Hg38)
End
71727670/71333890 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/1749067; hsa-mir-1178/Downstream/8085367;
Nearest TSS
ENST00000382841/Upstream/18134; ENST00000549015/Downstream/105880;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/723613, chr12-CpG: 104/Downstream/105522
Nearby gene
LGR5(+105880) ;
Upstream sequence
GAAGAAAGGAAGGTTATTTGCTAAGATTGATCCTCCAAGCTCAAAGTCTCCAAAGAATATGGGTATTCTTTGCCCCATGTACTATGTCTAACTAGAATAC
Downstream sequence
ATCTTGAAATATTCAAAATTTAGGATAGTCCAAGCTCTTTGGAGTTTTATAACATTTCACAAGACAGAGCAGAGTCATCTATAAGAAAAAGTCAACACAT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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