Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene76758287767096057671312876676871766774727666380176664273766964007669669576711044
Basic Information
VIS ID
TVIS44015250
Fusion event
HTLV-1-LOC105370265 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
77285179/76711044 (Hg38)
End
77285179/76711044 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13E
Target gene
LOC105370265
Nearest miRNA
hsa-mir-1297/Upstream/10492720; hsa-mir-1267/Downstream/986968;
Nearest TSS
ENST00000623511/Upstream/696543; ENST00000646457/Downstream/122795;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1073967, chr13-CpG: 195/Downstream/174143
Nearby gene
KCTD12(-169125) ;
Upstream sequence
ATGATTACTTGCCCAACGGAGTTGGCATCAGCCTTAGTCCTTCAACATCCCTTCCCTCACTAAGATTCTATGAAATACTGTGTTCCTCTAAATGCTATAC
Downstream sequence
CTTTCCTTCTTTGCCACCGCTTCACATTAATCCCTAAATAGTGTTCAATAAATGCCCATTGGTCTCTCAGGCAAATGTTGATTCaatgtggcaattgtag
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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