Basic Information
VIS ID
TVIS44015267
Fusion event
HTLV-1-LOC105377097 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
55275639/55241611 (Hg38)
End
55275639/55241611 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377097
Nearest miRNA
hsa-let-7g/Upstream/2395059; hsa-mir-12124/Downstream/610881;
Nearest TSS
ENST00000440867/Upstream/63439; ENST00000492683/Downstream/54589;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/615000, chr3-CpG: 24/Downstream/228562
Nearby gene
CACNA2D3(+167055) ;
Upstream sequence
actcacagttcttaagaggaggggcatgctgcaccacagagggccacacaggaagcaccagggtccatcaagaggcaagaggagcaaggggaaaatatgg
Downstream sequence
gcaagaatctttattgtggcttttgcaggaagcaatgtgggaggcaggttaagcaggtttagcactggctggcttaaataattttggtaggctctgggga
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate