Basic Information
VIS ID
TVIS44015268
Fusion event
HTLV-1-LOC105377198 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
87768161/87719011 (Hg38)
End
87768161/87719011 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377198
Nearest miRNA
hsa-let-7g/Upstream/492734; hsa-mir-12124/Downstream/8640953;
Nearest TSS
ENST00000440867/Upstream/442424; ENST00000319595/Downstream/74618;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/491575, chr3-CpG: 66/Downstream/73635
Nearby gene
HTR1F(+263565) ;
Upstream sequence
aaaaatatattcatgcaagtggtaaccagaatagagcaagagtagccatacttagataaaatgcagtttaacacaataatggtttttaaaagtccattct
Downstream sequence
acaataataaggggatcaaaagcaagagataccctcttaaacataatataagaggatacatacatacgtgcataatttataattataaatacacaggcac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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