Basic Information
VIS ID
TVIS44015283
Fusion event
HTLV-1-LOC107987080 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
77853173/75238257 (Hg38)
End
77853173/75238257 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107987080
Nearest miRNA
hsa-mir-101-2/Upstream/4428173; hsa-let-7a-1/Downstream/8731491;
Nearest TSS
ENST00000422679/Upstream/149714; ENST00000455583/Downstream/341412;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/149354, chr9-CpG: 148/Downstream/652057
Nearby gene
OSTF1(+91059) ;
Upstream sequence
aagaatgcattcgccaagtctaccacatagtggtactgtcccaattccatcatcaagcagtccatcaaatggtttgtaaggccaagccatgtagaatatc
Downstream sequence
cacccccagaatgtatttgtgctgggatctaccagcactaacacttgctatacgttggtggaggatcagaggattgctaatttcacatgtgactgctggt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate